Hierarchy For Package jbil.sequence

Package Hierarchies:

All Packages

Class Hierarchy

• java.lang.Object
  • jbil.common.AbstractAlgorithm (implements jbil.common.Algorithm)
    • jbil.sequence.GibbsMotifSiteSampler
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • jbil.sequence.Alphabet
        • jbil.sequence.DNAAlphabet
        • jbil.sequence.ExtendedDNAAlphabet
  • jbil.sequence.AbstractFixedLengthSequenceModel (implements jbil.sequence.FixedLengthSequenceModel)
    • jbil.sequence.MarkovFixedLengthSequenceModel
    • jbil.sequence.UniformFixedLengthSequenceModel
  • jbil.sequence.AlphabetRegistry
  • jbil.sequence.CharSymbol (implements jbil.sequence.Symbol)
    • jbil.sequence.AtomicCharSymbol (implements jbil.sequence.AtomicSymbol)
    • jbil.sequence.HighOrderCharSymbol (implements jbil.sequence.HighOrderSymbol)
  • jbil.sequence.Sequence
    • jbil.sequence.ByteArraySequence
    • jbil.sequence.SymbolArraySequence
  • jbil.sequence.SequenceFactory
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • jbil.sequence.InvalidSymbolException
  • jbil.sequence.Trie (implements jbil.sequence.KMerCounter)
    • jbil.sequence.FactorTrie
  • jbil.sequence.TrieForest (implements jbil.sequence.KMerCounter)

Interface Hierarchy

• jbil.sequence.KMerCounter
• jbil.sequence.SequenceModel
  • jbil.sequence.FixedLengthSequenceModel
• jbil.sequence.Symbol
  • jbil.sequence.AtomicSymbol
  • jbil.sequence.HighOrderSymbol