AbstractAlgorithm
AbstractFixedLengthSequenceModel
Algorithm
Alphabet
AlphabetRegistry
ArrayPrinter
ArrayUtilities
AtomicCharSymbol
AtomicSymbol
BadInputException
BooleanArrayUtilities
ByteArraySequence
CharSymbol
DNAAlphabet
ExtendedDNAAlphabet
FactorTrie
FixedLengthSequenceModel
GibbsMotifSiteSampler
GibbsMotifSiteSamplerTest
HighOrderCharSymbol
HighOrderSymbol
IntIntervalDist
IntIntervalGen
InvalidSymbolException
JDKRandomStream
KMerCounter
MarkovFixedLengthSequenceModel
MarkovMotifPvalueTest
Pair
RandomManager
RandomUtilities
Sequence
SequenceFactory
SequenceModel
Symbol
SymbolArraySequence
Trie
TrieForest
UniformFixedLengthSequenceModel
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