jbil.common
Class AbstractAlgorithm

java.lang.Object
  jbil.common.AbstractAlgorithm

All Implemented Interfaces:

Algorithm

Direct Known Subclasses:

GibbsMotifSiteSampler

public abstract class AbstractAlgorithm
extends java.lang.Object
implements Algorithm

Stub implementation of the Algorithm interface.

Author:

Paulo G. S. da Fonseca

Constructor Summary

AbstractAlgorithm()

Method Summary

java.lang.Object	getInput(java.lang.String name) Get the input value associated to a name.
java.lang.Object	getOutput(java.lang.String name) Gets an output of the algorithm from its name.
abstract void	run() Executes the algorithm once.
void	setInput(java.lang.String name, java.lang.Object value) Sets an input to the algorithm.
void	setInputs(java.util.Map<java.lang.String,java.lang.Object> inputs) Sets multiple inputs to the algorithm.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractAlgorithm

public AbstractAlgorithm()

Method Detail

getInput

public java.lang.Object getInput(java.lang.String name)

Description copied from interface: Algorithm

Get the input value associated to a name.

Specified by:

getInput in interface Algorithm

Parameters:

name - The name of the input

setInput

public void setInput(java.lang.String name,
                     java.lang.Object value)

Description copied from interface: Algorithm

Sets an input to the algorithm.

Specified by:

setInput in interface Algorithm

Parameters:

name - The name of the input.

value - The value of the input.

setInputs

public void setInputs(java.util.Map<java.lang.String,java.lang.Object> inputs)

Description copied from interface: Algorithm

Sets multiple inputs to the algorithm.

Specified by:

setInputs in interface Algorithm

Parameters:

inputs - A map associating the names of the inputs to their values.

getOutput

public java.lang.Object getOutput(java.lang.String name)

Description copied from interface: Algorithm

Gets an output of the algorithm from its name.

Specified by:

getOutput in interface Algorithm

Parameters:

name - The name of the output.

run

public abstract void run()

Description copied from interface: Algorithm

Executes the algorithm once.

Specified by:

run in interface Algorithm