Uses of Interface
jbil.sequence.KMerCounter

Packages that use KMerCounter

jbil.sequence

Uses of KMerCounter in jbil.sequence

Classes in jbil.sequence that implement KMerCounter

class	FactorTrie A factor trie is a trie representing all factors of a given length of a set of sequences.
class	Trie Class representing an extended character trie over a given alphabet.
class	TrieForest Class representing a trie forest.

Fields in jbil.sequence declared as KMerCounter

KMerCounter

MarkovFixedLengthSequenceModel.transitionsTree

Constructors in jbil.sequence with parameters of type KMerCounter

MarkovFixedLengthSequenceModel(Alphabet alphabet, int length, int order, KMerCounter transitionsTree)
Constructs a new K-order Markov sequence model.