Uses of Class
jbil.common.Pair

Packages that use Pair

jbil.common
jbil.sequence

Uses of Pair in jbil.common

Methods in jbil.common that return Pair

Pair<F,E>

Pair.invert() Creates a new pair with the same elements of this pair in inversed order.

Uses of Pair in jbil.sequence

Methods in jbil.sequence that return Pair

Pair<java.lang.Integer,java.lang.Integer>	TrieForest.countOccurrences(Sequence pattern, int beginIndex, int endIndex, int offset) Counts the number of occurrences of the patterns pattern[beginIndex..endIndex-2] and pattern[beginIndex..endIndex-1] respectively, as prefixes of words represented by the subtries of the active tries in the forest rooted at nodes at a given height.
Pair<java.lang.Integer,java.lang.Integer>	Trie.countOccurrences(Sequence pattern, int beginIndex, int endIndex, int offset) Counts the number of occurrences of the patterns pattern[beginIndex..endIndex-2] and pattern[beginIndex..endIndex-1] respectively, as prefixes of the words represented by the subtries rooted at nodes at a given height.
Pair<java.lang.Integer,java.lang.Integer>	KMerCounter.countOccurrences(Sequence pattern, int beginIndex, int endIndex, int offset) Counts the number of occurrences of the kmers pattern[beginIndex..endIndex-2] and pattern[beginIndex..endIndex-1] respectively, from a given position in a set of sequences.
Pair<java.lang.Integer,java.lang.Integer>	FactorTrie.countOccurrences(Sequence pattern, int beginIndex, int endIndex, int offset)
Pair<java.lang.Integer,java.lang.Integer>	Trie.countOccurrences(Sequence pattern, int beginIndex, int endIndex, jbil.sequence.Trie.TrieNode node) Counts the number of occurrences of the patterns pattern[beginIndex..endIndex-2] and pattern[beginIndex..endIndex-1] respectively, as prefixes of the words represented by the subtrie rooted at a given node.