A B C D E F G H I J K L M N O P R S T U V W Y

D

d - Static variable in class jbil.sequence.ExtendedDNAAlphabet

The high order d={a,g,t} symbol

d() - Method in class jbil.sequence.ExtendedDNAAlphabet

delete(int, int) - Method in class jbil.sequence.ByteArraySequence

delete(int, int) - Method in class jbil.sequence.Sequence

Deletes a subsequence of this sequence.

delete(int, int) - Method in class jbil.sequence.SymbolArraySequence

deleteSequence(Sequence) - Method in class jbil.sequence.Trie

Removes a sequence from the trie provided that it belongs to the (multi)set of sequences represented by the trie.

deleteSequence(Sequence, int, int) - Method in class jbil.sequence.Trie

Deletes a subsequence of a given sequence from the trie.

DNA_ALPHABET - Static variable in class jbil.sequence.DNAAlphabet

The alphabet name constant

DNAAlphabet - Class in jbil.sequence

Class representing the basic DNA nucleotide alphabet {a,g,c,t}.

DNAAlphabet() - Constructor for class jbil.sequence.DNAAlphabet

Creates a DNA {a,g,c,t} alphabet.