Ivan Gesteira Costa Filho

Software:

• GQL: The Graphical Query Interface
  Graphical interface for the analysis of gene expression time-courses
• MixDTrees: Mixture of Developmental Trees
  Software for the analysis of expression data from developmental processes.
• Pymix - the Python Mixture package
  Python toolbox for mixture model analysis.

• Inferring Differentiation Pathways from Gene Expression. Contributed Talk at International Conference of Intelligent Systems for Molecular Biology, Toronto, Canada.
• Chinese Restaurant Process: Bayesian Inference of Mixture Models Ph.D. Defense Talk at the Freie Universitat Berlin, Germany [pdf].
• Validating Gene Clusterings by Selecting Informative Gene Ontology Terms with Mutual Information. Contributed Talk at Brazilian Symposium on Bioinformatics, Angra dos Reis, [pdf].
• On the Feasibility of Heterogeneous Analysis of Large Scale Biological Data. Contributed Talk at ECML Workshop on Data and Text Mining for Integrative Biology, Berlin, Germany [pdf].
• Gene Expression Trees in Blood Cell Development. Contributed Talk at Plos Track of the International Conference on Intelligent Systems for Molecular Biology, Fortaleza, Brasil [pdf].
• Clustering of Gene Expression Time-courses: Methods and Validity of Solutions. Invited Talk at Bioinformatics Working Seminar of the Max Planck Institute of Molecular Plant Physiology, Golm, Germany[pdf].

Links: